Source Code

RDDpred_v1.1.tar.gz

Paper Summary

RDDpred_PaperSummary.pdf

MES-sites Production Summary

RDDpred_MES_Summary.pdf

Total workflow







RDDpred: A condition-specific RNA-editing prediction model from RNA-seq data


1) RDDpred deduces condition-specific training examples without any experimental validations to construct a predictor.

2) As far as we know, RDDpred is the very first machine-learning based automated pipeline for RNA-editing prediction.

3) RDDpred successfully reproduced the results of two previous studies (95%, 90%),
with showing significant NPV (84%, 75%) and the prediction procedures are finished in reasonable time (18 hrs).



Citation

Kim et al., "RDDpred: a condition-specific RNA-editing prediction model from RNA-seq data.", BMC Genomics 2016, 17(Suppl 1):5