TRAP integrates all necessary tasks such as
- mapping short reads
- measuring gene expression levels
- finding DEGs
- clustering and pathway analysis
for time-series data.
Algorithms used in TRAP
- TRAP extended existing pathway analysis methods, ORA and SPIA, for time series analysis and estimates statistical values for each pathway.
- TRAP uses gene expression change labeling as clustering which is more practical to identify up-regulated or down-regulated genes in terms of time points.
- TRAP also produces visual summary of pathway interactions.
TRAP News
- 2015/06/08 : TRAP ver 2.2 released
- 2015/05/27 : TRAP ver 2.1 released
- 2014/07/18 : TRAP ver 2.0 released
- 2014/05/21 : TRAP ver 1.71 released
- 2014/04/14 : TRAP ver 1.7 released
- 2014/04/06 : TRAP ver 1.6 released
- 2014/03/26 : TRAP ver 1.5 released
- 2014/03/07 : TRAP-web ver 1.0 launch
- 2014/02/26 : TRAP ver 1.1 released
- 2014/02/15 : TRAP ver 1.0 updated with minor changes
- 2014/02/05 : TRAP ver 1.0 released
