Three main features of TimeTP
Delay analysis by Cross-correlation to locate perturbed subpathways and to construct time bounded network
Labeled influence maximization to find transcription factors that trigger the pathway perturbation.
TF-Pathway map in time clock to visualize path from TF to perturbed subpathway with expression propagation along time.
TimeTP News
2016/07/27 : TimeTP-web released
2016/07/02 : TimeTP ver 1.0. bug fixes
2016/06/28 : TimeTP ver 1.0. bug fixes
2016/06/15 : TimeTP ver 1.0. released
Publication
Influence maximization in time bounded network identifies transcription factors regulating perturbed pathways. Kyuri Jo; Inuk Jung; Ji Hwan Moon; Sun Kim. Bioinformatics 2016 32 (12): i128-i136 doi:
10.1093/bioinformatics/btw275