BioVLAB-MMIA-NGS Analysis page supports to setup the all the parameters and user inputs for MMIA analysis. Each selectd parameters and user inputs will be directly injected to construct BioVLAB-MMIA-NGS workflow.

Currently Mac OSX has jre issue, so please use window machine. We will update as soon as the Mac OSX jre issue is resolved.

Prerequisites

  • Java Runtime Environment (JRE)
  • If your system doesn't have JRE installed, click HERE to install.
  • Adjust Java Security Level
  • If you use recent version of JRE(after Java 7 Update 51), adjust JAVA security level to allow Java web start. How?

Sample Information

  • Species information 
  • Reference Species Prefix Need Help
  • miRNA sample information
  • Data Type
    Need Adaptor Clipping?
    Data uploading method

    Class# Sample Location(fastq format) Adaptor Sequence
    Add Sample Add Replicate
  • mRNA sample information 
  • Data Type
    Sequencing Type
    Need Adaptor Clipping?

    Class# Pair# Sample Location Adaptor Sequence
    Add Sample Add Replicate

Analysis Options

  • miRNA 
  • DEmiRNA cutoff method Cutoff value
    miRNA target prediction algorithm Set operation
  • mRNA 
  • DEG cutoff method Cutoff value
  • Computational Node


Start MMIA!